I might not be understanding your question, but as Toodledo is "in the cloud", your iPod Touch will be syncing directly with the Toodledo servers so it is pretty much independent of the desktop computer. All it needs is an internet connection.
Well, it is good news but there are some considerations.
You need to deal with the possibility that you might modify a task on one device and then modify the same task on the other device, without having first synced to the website. When you do sync, the older change will be lost. Toodledo doesn't offer any choice of data conflict resolution.
To make syncing across multiple devices more reliable, set "Sync at Startup" and "Sync on Edit" to ON in the Toodledo iPhone app.
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